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This protein does “T Twist”

an image of the NMDAR protein
A 3D rendering of the NMDAR protein, GluN1-2B, in its open formation.

Proteins are constantly performing a kind of dance. They move and contort their bodies to fulfill specific functions inside our bodies. The NMDAR protein executes an especially hard dance routine in our brains. One wrong step can lead to a range of neurological disorders. NMDAR binds to the neurotransmitter, glutamate, and another compound, glycine. These bindings control NMDAR’s dance steps. When their routine is over, the NMDAR opens. This open ion channel generates electrical signals critical for cognitive functions like memory.

The problem is that scientists couldn’t figure out the last step in NMDAR’s routine—until now. ư Professor Hiro Furukawa and his team have deciphered the critical dance move in which NMDAR rotates into an open formation. In other words, they’ve learned the NMDAR “Twist.”

CSHL Professor Hiro Furukawa has long been interested in the NMDAR protein. In this episode of our podcast, he discusses a 2020 study that began to show how the NMDAR opens.

To capture this key step, Furukawa and his team used a technique called electron cryo-microscopy (cryo-EM), which freezes and visualizes proteins in action. First, the team had to find a way to keep a type of NMDAR called GluN1-2B in its open pose long enough to image it. So, Furukawa teamed up with Professors Stephen Traynelis and Dennis Liotta at Emory University. Together, they discovered a molecule that favors NMDAR in an open position.

animated image of the NMDAR protein
This animation takes us inside NMDAR as it dances its way into an open formation.

“It’s not the most stable conformation,” Furukawa explains. “Tre are many pieces dancing independently in NMDAR. They have to coordinate with each other. Everything has to go perfectly to open the ion channel. We need a precise amount of electrical signals at the right time for proper behaviors and cognitions.”

The cryo-EM images allow researchers to see precisely how the NMDAR’s atoms move during its “Twist.” This may one day lead to drug compounds that can teach the correct moves to NMDARs that have lost a step. Better drugs that target NMDARs might have applications for neurological disorders like Alzheimer’s and depression. Furukawa explains:

“Compounds bind to pockets within proteins and are imperfect, initially. This will allow us and chemists to find a way to fill those pockets more perfectly. That would improve the potency of the drug. Also, the shape of the pocket is unique. But there could be something similarly shaped in other proteins. That would cause side effects. So, specificity is key.”

Indeed, there are many types of NMDARs in the brain. Another recent study from Furukawa’s lab offers the first view of the . Surprisingly, its dance moves are completely different. This routine results in unusual patterns of electrical signals.

In other words, we’re mastering the Twist. Next up: the headspin.

Written by: Luis Sandoval, Communications Specialist | sandova@cshl.edu | 516-367-6826


Funding

National Institutes of Health, Austin’s Purpose, Robertson Research Fund, Doug Fox Alzheimer’s Fund, Heartfelt Wings Foundation, Gertrude and Louis Feil Family Trust

Citation

Chou, T. H., et al., “Molecular Mechanism of ligand-gating and opening of NMDA receptor channel”, Nature, July 31, 2024. DOI:

Michalski K., Furukawa, H., “Structure and function of GluN1-3A NMDA receptor excitatory glycine receptor channel,” Science Advances, April 12, 2024. DOI:

Core Facilites

cryo EM “T Electron Cryomicroscopy (Cryo-EM) Facility offers researchers access to cutting-edge technology that has made it possible to visualize complex biological systems at near atomic resolution and detail, providing novel molecular insight into human biology and disease.” — Cryo-EM Facility Manager Dennis Thomas

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Principal Investigator

Hiro Furukawa

Hiro Furukawa

Professor
Cancer Center Member
Ph.D., The University of Tokyo, 2001

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